Archive for the ‘State of the River’ Category

Stories Your FOSR Data Can Tell You

We encourage you to visit our map and data portal that will open with a map identifying all of the FOSR’s monitoring sites throughout the Shenandoah River watershed.  You will be able to click on the individual markers that will lead you to a link to obtain FOSR’s water-quality data for that site. The FOSR’s “Water Window” data portal provides unparalleled documentation of the evolving health of the Shenandoah River watershed.

The story from Clarke County is that if the trend in nitrate levels continues, the ground water in the karst areas of the county will contain nitrate concentrations that exceed the US EPA drinking water limit of 10 mg/l of nitrate as N in the latter part of this century or possibly in the next.   Most of us in the Shenandoah Valley live in the karst areas  and thus, in the future, many of  our rural wells could yield water containing high nitrate concentrations. The five streams FOSR has been monitoring for the past 18 years in Clarke County all show increasing low-flow nitrate concentrations of between 0.6 to 1.5 mg/l. (The Wheat Spring Branch record includes only the last 10 years.) a straight line projection of this  increase suggests that, if this trend continues, two streams could reach EPA’s drinking water limit of 10 mg/L before 2100:   Wheat Spring Branch FC32 and Dog Run FC06.  Chapel Run CF18 and Lewis Run FC03 are projected to reach 10 mg/L during 2100 to 2200. Spout Run FC02 and Page Brook FC09, a Spout Run tributary, are increasing more slowly and will not exceed 10mg/l till after 2300.

Untitled     Low-flow stream nitrate concentrations are linked to groundwater concentrations.  FOSR’s recent analysis of springs showed that in general springs yield water with higher nitrate concentrations than the streams to which they  are tributary. For example Carter Hall Spring water contained 3.5 mg/L during a period when Spout Run contained a little less than 2.5 mg/L of nitrate. See and “FOSR Report: Risks of biosolid fertilizer application on water quality.”

Ground water is the entire water supply of the streams during periods of low flow. (See ) The definition of low flow for this report is when the flow of Spout Run at the gage is less than 0.5 cubic feet per second per square mile (cfsm) or 10.6 cubic feet per second (cfs). The gage flow records for USGS 01636316 SPOUT RUN AT RT 621 NEAR MILLWOOD, VA show that the discharge (flow) averaged no more than 0.5 cfsm 23% of the days during the 12-year period of record.

USGS Fact Sheet FS 2004-3067 published in 2005 shows that Clarke County karst areas have a very good chance of having 3 mg/L of nitrate in the ground water and about a 50% chance of having the EPA drinking water limit of 10mg/L in the ground water. Low-flow nitrate concentrations indicate the minimum concentration in the ground water. After water enters the stream, algae use nitrate to grow, thus reducing the nitrate concentrations in the water.  It’s possible that animal waste washing into streams could  increase nitrate concentration as flow increases. Dog Run, Lewis Run and Wheat Spring Branch increase in nitrate concentration as the flow increases. The other streams decrease in nitrate concentration as flow increases. However, there is no wash off when the flow is 0.5 cfsm or less.

written by Wayne Webb

Figures from USGS Fact Sheet FS 2004-3067

Figure 3




Aquatic Biogeochemistry of Nitrogen and Phosphorus: a guide to the wilderness.

The Friends of the Shenandoah River (FOSR) has conducted a monitoring program that now is approaching 25 years in duration.  Nitrogen (N) and phosphorus (P) are among the nutrients whose concentrations are measured: N as ammonia and as nitrate plus nitrite, P as reactive orthophosphate. The purpose of the monitoring is to detect changes in nutrient concentrations that interfere with our uses of the river and to guide management decisions to correct emerging pollution problems in the Shenandoah River and its tributaries and further downstream in Chesapeake Bay.  References to FOSR data in the newsletter almost always center on these data.

Now, more than two decades later, we realize that the choice of N and P as chemical parameters to be measured were common sense choices.  Other chemical measurements might have been chosen to be sure, but shortages of time and money imposed limits.  Despite inevitable limits these were excellent beginnings and the value of the data has increased with time.  The water qualities in the valley are controlled by natural processes involving these nutrients in a complex “wilderness” of interacting processes in aquatic biology, aqueous chemistry, and hydraulic physics.  All of these dynamic processes interact in a geological setting transported from upstream to downstream by flowing waters.  Water is the geomorphic medium of erosion, transport, and deposition. The aqueous chemical reactions take place in water. Water is also a universal solvent of organic and inorganic compounds and the medium in which the aquatic biota live.  Altogether water is a complicated and wonderful wilderness that is both the essential resource for life and the supporting resource for human existence.

The following essay is offered to provide a primer about some of these features of N and P in aquatic ecosystems… sort of a guide to the wilderness.  This may be useful background that will help interpret the monitoring results and design ways to correct pollution insult for the benefit of the Shenandoah Valley.

Some Biological Roles of Nitrogen    A universal feature of living things, both plants and animals, is the presence of nitrogen (as –NH2 ) in amino acids, the building blocks of  structural proteins and enzymes. Photosynthetic plants synthesize amino acids and proteins from CO2 and inorganic nitrogen compounds, ammonia (NH3) or nitrate (NO3).  Just how those forms of carbon and nitrogen are made available is a topic for later, but for now the important fact is that N is an essential component of newly formed protein.  Animals do not synthesize proteins from inorganic nitrogen compounds; they must get them from their food; plants in the case of herbivores, or prey animals, in the case of carnivores.

Some Biological Roles of Phosphorus    Likewise, phosphorus is essentially present in all living things. It is a structural element in DNA and it plays a central role in biochemical reactions that require energy.  The energetic currency of cellular metabolism is adenosine triphosphate (ATP), a phosphorus-rich molecule that is continuously providing energy for living cellular processes.  The details of intracellular P cycling can wait until later. For now search with “google” for the Kahn Academy’s description of the Kreb’s cycle.  Appreciate that phosphorus is essential for life’s energy requiring processes AND it is involved in the transfer of genetic information from generation to generation during reproduction and algal population growth… a result known as an algal “bloom” in cases where nutrient enrichment, or loading, is rapid and widespread.

Roles of N and P in ecosystem interactions.  With that brief account of nitrogen and and phosphorus acting at the cellular level of organization one can see that there must be some emergent or supporting processes at the population level.   For example: if N and P are essential nutrients for growth and reproduction in plant and animal populations: more individuals in a population requires additional N and P.  Appreciate that growth occurs at individual (organism size) AND at population levels (numbers of individuals).  Plants and animals engage in relationships in yet other levels of organization… variously described as trophic structure, food chains, food webs, herbivory, and predation. These are examples of emergent ecosystem processes.  The complexity grows.

Nitrogen and phosphorus may be thought of as chemical tracers of these ecosystem patterns at several levels of complexity even though they serve different biological functions and N in the biomass is 10-15 times more abundant than P.  In summation, when aquatic ecosystems are supplied with nutrients from watershed sources at about the same rate that nutrients are lost to long-term nutrient sinks downstream, then the ecosystem trends toward a stable, dynamic, equilibrium.  The biotic components (species diversity) of the river ecosystem regulate these nutrient cycles and, through time, have adapted to the geologic/climatic processes that govern nutrient cycling.  The condition known colloquially as the “balance of nature” is a dynamic and complex interaction of biological, chemical, and physical “parts”… the total is more than the sum of the parts and change is as common as stability.

Nutrient limitation.  Ecosystem equilibrium is related to the imports and exports of nutrients that have the potential to limit photosynthesis.  This is a classic application of Liebig’s Law of the Minimum: i.e. the factor that limits growth is the factor that is minimally available relative to its demand.  The concept of nutrient limitation in aquatic ecosystems is underpinned by Alfred C. Redfield’s observations in the ocean that the ratio of the common nutrient elements; carbon:nitrogen:phosphorous, to one another in marine organisms approximates 106:16:1 … atom:atom; about the same as the ratio of these elements in the deep ocean.  Redfield’s 1958 article on the control of the ocean’s chemistry by biological processes in the journal, American Scientist, is still a good read.

Carbon, as carbonate, is plentiful in the Earth’s bedrock and many soils… and it is  available from the atmosphere, as CO2, so it is rarely limiting.  Nitrogen and phosphorus were more likely to be available in short supply.  The most common limiting nutrient of plankton algal production in inland lakes is phosphorus (P) and nitrogen (N) is more commonly the limiting nutrient in the ocean or estuaries such as Chesapeake Bay.  There are examples in the literature of algal limitation by silica, in the case of diatom production and by iron in the open ocean.

Plankton populations of algae in rivers and streams are rarely nutrient limited because the rate of downstream transport of algal populations exceeds the rate of population growth… even at base flow, but more certainly at higher velocities in the flow regime.  If, however, the river is shallow enough and the water clear enough for light to penetrate to a stable channel bed then benthic (attached) algae may grow and take up nutrients from the flowing water.   In-stream reaches where sediment in the channel provides for the establishment of beds of submersed aquatic vegetation that may be supplied with nutrients from the flowing water and/or by uptake from the sediments via a root system.  This phenomenon accompanies drought.  Slowing of flow by dams or in pools may also encourage plankton algal responses to higher nutrient concentrations.  We realize that flowing water is at once the medium that transports materials downstream AND it is the geomorphic agent responsible for the changing geometry of the channel through erosion and deposition processes.

Thus, a role of flowing water is the transport of N and P to downstream non-flowing waters (i.e. lakes, impoundments, reservoirs, and estuaries) where they might accumulate and where planktonic algae make up the photosynthetic community… more later about nutrient algal blooms and losses from streams and rivers.

Sources of nitrogen supply and pathways of loss.   Elemental nitrogen (N2) is a gas that makes up 78% of the atmosphere.  Though it is soluble and plentiful in water, N2 cannot enter into the metabolic processes of most plants. Nitrogen is present also in soils as nitrate (NO3), nitrite (NO2) and ammonia (NH3).  All of these forms of N are useable by plankton algae to synthesize amino acids and protein.  The presence in the soil of these useable N compounds is the result of a biological process called nitrogen fixation carried out by bacteria associated with the roots of legumes, such as alfalfa, lupine, peas, and beans.  Among the plankton algae, certain blue-green algae have the capacity to fix elemental nitrogen.  Once fixed as ammonia, amino acids, and proteins, organic nitrogen compounds enter the cycle that supports the growth of plankton algae.  Virtually all N-cycling  reactions are mediated by biological processes.  These include N2 fixation and denitrification losses to the atmosphere.  Note that when adequate phosphorus is available and nitrogen becomes limiting, the plant community often adapts by encouraging N-fixing species (blue-green algae) to enter the community.  This is a self-correcting response at the community level to nutrient limitation. Some of these blue-greens produce toxic compounds and compounds that impose disagreeable tastes and odors to water supplies.  There is no such biological feedback phenomenon accompanying P limitation.   The reduction of NO3 to NO2 to NH3 to N2 is mediated by denitrifying bacteria and may be an important pathway of N loss to the atmosphere.

Sources of phosphorus supply and pathways of loss.   The pre-settlement pristine source of P to water bodies was the soils and the weathering of parent rocks of the watershed.  Phosphorus is present in soils as calcium phosphate, and as polymeric or particulate organic P.   Dissolved P as phosphate (=PO4) is present at low concentrations (say, < 0.05 mg/L) in inland waters, first, because the rate of supply from the watershed is typically low, second, because PO4 is taken up rapidly by planktonic algae, and third, because PO4 has a strong adsorption affinity for suspended clays that settle to the bottom.  Finally, PO4 reacts with ferric iron to form insoluble ferric phosphate, that also settles to the bottom sediments.  These phenomena are such that P loading frequently increases when sediments are being transported.  Most of this happens during the small fraction of the time when flooding occurs and not much occurs at low flows… most of the time.  Atmospheric sources of P are virtually zero and there are no biogenic gaseous P compounds so, unlike N, there are no losses to the atmosphere. 

Effects of N or P limitation at the ecosystem level.  When N and P are available in the water at appropriate concentrations; that is, N:P ~ 10:1-15:1 and import is equal to export, the plant (algal) community tends towards equilibrium and stability.  If the rate of import of either N or P increases, then photosynthesis will respond by increasing the rate of carbon fixation, i.e., the synthesis of organic matter and the consequent growth of algal populations.  The increased rate of algal growth will be maintained until another nutrient becomes limiting.  The biomass may be greater under the new import/export regime having the effect of providing a larger supply of organic matter to the bacterial community.  Oxygen uptake by the bacterial community (aerobic decomposers) increases and dissolved oxygen concentration decreases.  The water in the deeper layers of thermally stratified lakes or estuaries, where O2 exchange with the atmosphere cannot occur and where light is insufficient for photosynthetic oxygen production, becomes depleted in oxygen (hypoxiaàanoxia), the eutrophic condition common in productive lakes.

Without human influence lakes, rivers, reservoirs, and estuaries proceed through a series of stage changes known as succession; natural eutrophication.  The rate at which this happens varies in different geological settings and climates, but on balance it is controlled by the rates of nutrient supply and nutrient cycling.   The time scale of change is on the order of centuries to millennia.

Human induced nutrient enrichment:   With European settlement (since, say, 1607) and development of modern economy using water for domestic supply, agricultural irrigation, power generation, navigation and waste reception (export), more rapid change was imposed and equilibria were disrupted, that is, the system was “unbalanced”.

Water was, at once, valued for many crucial uses and vulnerable to degradation.  Urban sewage (rich in organic N and P) was disposed of by piping it directly into streams and rivers.  When this practice became objectionable, sewage was “treated” by bacterial decomposition.  The effluent decomposition products, now inorganic, were still rich in N and P are still discarded to rivers and streams…by design.  Industrial and agricultural wastes (animal wastes and excess N and P fertilizers) have similar fates with, likewise, similar effects.

An estuarine phenomenon involving P storage in Bay sediments   Note that oxygenated water at depth supports the formation of a thin surface zone of oxidized compounds at the sediment-water interface.  This layer of oxidized compounds acts as a barrier to P diffusion from the deeper anoxic sediments.   Under complete anoxia (E7 < 0.2v) in water overlying this zone, ferric iron (insoluble) is reduced to ferrous iron (soluble), the barrier dissolves, and P is recycled by diffusion from the sediments. This is an internal seasonal process in lakes and estuaries.  It is a mechanism for the storage and release of phosphorus and makes P available that entered the Bay sediments adsorbed to suspended particles from the watershed.   This means that sediments transported to the Bay from the watershed represent a source of P to the plankton community.   Furthermore, it explains why there is a large amount of P in the Bay sediments.  The export of P from the Bay to the ocean is less than the import  of P from the watershed such that the Bay acts as a P trap.  The mass of P that has accumulated in this “trap” since European settlement is probably large enough to supply Bay phytoplankton blooms for decades despite P load-reduction management in the Bay watershed.

The upshot is that water bodies lose utility for human use because the equilibrium of slow change or stability is disrupted and replaced by rapid changes in algal growth (causing objectionable floating scums and taste/odor problems), shifts in species composition to include cyanobacteria that are less valuable as food for grazers and filter-feeders (some are toxic) followed by a cascading sequence of disequilibria throughout the aquatic ecosystem; e.g., a burst of bacterial growth decomposing algal biomass and depleting dissolved oxygen concentration. The onset of anoxia creates reducing conditions that shift many insoluble metal oxides to their soluble species.  Many metals are toxic and have cumulative effects.  These events may trigger redox reactions involving iron in the sediments that change the solubility of P compounds. This releases additional nutrient P that, in concert with newly fixed ammonia, stimulates further algal production in a diabolical example of positive feedback.  Aerobic benthic organisms leave or die… bottom feeding predators are deprived of their food source and leave or starve.  The loss of the ecosystem’s stable equilibrium on short time scales of decades to centuries represents a major disturbance with far-reaching effects that diminish its utility for human uses.

  ~G.R. Marzolf, Winchester, VA

FOSR Report: Risks of biosolid fertilizer application on water quality


A good look at Karst topography

How does nitrogen get in the streams of the Shenandoah Valley?

The water quality data compiled from this FOSR 2013 study in Clarke County, Virginia indicate that springs located near fields or areas where biosolids have been applied have higher Nitrate concentrations than those springs located in areas where biosolids have not been applied.

Download the full report in PDF

This study was conducted by Friends of the Shenandoah River with cooperation of Clarke County and the willingness of landowners who gave access to the springs. Funds for the study were granted to Alison Teetor by the 2013 Citizen Water Quality Monitoring Grant Program, from the Virginia Department of Environmental Quality, and from the Chesapeake Bay Restoration Fund. Chemical analyses were conducted by Karen Andersen and Molly Smith. Ben Sawyer performed GIS measurements and helped with hydrologic analyses. John Young USGS Leetown, WV loaned a stream flow meter. Richard Marzolf helped write this report.

Good News for Friends of the Shenandoah Valley River System

In July, The South River Science Team sent out for review to its more than 100 members a draft proposal with the title “Remediation of Mercury in the South River and a Segment of the South Fork of the Shenandoah River.” Following review, the document will be submitted to NRDC and the Sierra Club to fulfill a consent agreement.  This agreement also required an extensive study, recently completed, of the consequences that mercury brought about for biota in the South River region.

NRDC and the SC would not enforce the remediation measures discussed in the proposal.   However, the proposal is significant for two reasons: it serves as a blueprint for an actual remediation program under RCRA regulations to be administered by DEQ and it also signals a major change in emphasis by the SRST.  Since 2001, SRST has focused its efforts to find out where, how much, and in what forms mercury exists in the South River environs.   Now “how to” has been added as a prime function and so engineers are playing increasingly more prominent roles.

The site conceptual model has quantitatively identified stream banks and floodplain sediments as the main sources of mercury to the South River.  The primary remediation tools are to be bank stabilization and carbon (biochar) adsorption.  Pilot studies have been undertaken to refine how and where these will be implemented.   Remediation will be conducted in stages.  The first will be the two-mile reach starting at the DuPont (now Invista) plant site in Waynesboro.

Short- and long-term monitoring will be key in assessing results and guiding future actions.  Adaptive management tools will govern the evolution of the remediation; risk analysis using Boolean mathematics will play a part as well.  Meanwhile, geochemical and biochemical studies will continue to see if they can supplement the primary tools.

The following task teams within the SRST have been formed this past year for the purpose of refining the remediation program:

• remedial options
• monitoring
• human exposure
• program integration of regulatory and legal drivers

Remediation design is scheduled for 2014; implementation commencement is scheduled for 2015.

The Friends of the Shenandoah River has been the citizens group most involved with the SRST since its inception in February 2001.  Meryl Christiansen began this association at the earliest meetings.  So FOSR members especially should celebrate the above developments to make our river healthier.  We have an additional benefit—the mountain of excellent research that is concentrated on the South River pretty much applies to the Shenandoah River as well!  Look at the website: http//  A password is no longer required.

Download Bob Luce’s presentation ( ROPS Update 7-17-13) to the FOSR board. All the slides (except the first) originated from talks by other South River Science Team members on July 16 and 17 in VADEQ Valley headquarters in Harrisonburg; permission to reproduce these for FOSR members.

~by Bob Luce

Water Quality: A Report from Charles Vandervoort

Charles Vandervoort is a retired systems analylist and volunteer for the Friends of the Shenandoah River. His comprehensive report on water quality in the watershed pulls together data from the past decade to reveal a more accurate picture of the river today. Download the professionally formatted version of “The Status of Water Quality in the Rivers and Tributaries of the Shenandoah River Watershed“, a Shenandoah River water quality report by Charles Vandervoort.

Watch this short interview with Charles.


Copyright © 2013 Friends of the Shenandoah River